The Altyn-Emel National Park, being a specially protected natural area, plays an important role in preserving the gene pool of rare plants, 31 of which are listed in the Red Book of Kazakhstan:
1. Fritillaria pallidiflora Schrenk*
2. Тulipa alberti Regel*
3. Тulipa kolpakovskiana Regel*
4. Тulipa brachystemon Regel*
5. Populus pruinosa Schrenk*
6. Celtis caucasica Willd.*
7. Rheum wittrockii Lundstr.*
8. Silene muslimii N. Pavl.*
9. Paeonia hybrida Pall.*
10. Aquilegia vitalii Gamajun.*
11. Hepatica falconeri (Thoms) Steward*
12. Gymnospermium altaicum (Pall.) Spach.*
13. Berberis iliensis M. Pop.*
14. Stroganovia sagittata Kar. Et Kir.*
15. Rhodiola rosea L.*
16. Malus sieversii (Ledeb.) M. Roem.*
17. Armeniaca vulgaris Lam.*
18. Chesneya dshungarica Golosk.*
19. Astragalus dshimensis Gontsch.*
20. Haplophyllum dshungaricum Rubtz.*
21. Prangos herderi (Regel) Herrnst. et Heyn.*
22. Silaus saxatilis Bajt.*
23. Pilopleura goloskokovii (Korov.) M. Pimen.*
24. Ferula iliensis Krasn. ex Korov.*
25. Limonium michelsonii Lincz.*
26. Lepechiniella michaelis Golosk.*
27. Lonicera iliensis Pojark.*
28. Asterothamnus fruticosus (Wikl.) Novopokr.*
29. Plagyobasis centauroides Schrenk*
30. Iridodictyum kolpakowskianum (Regel) Rodionenko*
31. Сrocus alatavicus Regel et Semen.*











